University of Turku

1-2 Fully Funded Doctoral Researcher positions in MSCA Doctoral Network HoloGen

2024-10-14 (Europe/Helsinki)
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The University of Turku has a unique, creative and inspirational work environment. Here you will work with top experts, pedagogues and researchers.

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HoloGen is a MSCA Doctoral Network that will train the next generation of researchers in the emerging field of hologenomics. Microorganisms living in and on animal hosts impact nearly every biological process, and hologenomics aims to uncover how hosts and microbes interact. Understanding these interact will transform fields from basic biology to applied science in agrobiology, biomedicine, and more.

HoloGen brings together experts from 18 partners across Europe (universities, research institutes and industry), and will combine expertise in symbiosis biology, microbial ecology, computational biology, and other fields. The network will offer the successful candidates an unprecedented learning environment, including a common training program and research visits to both academic and industry partners.

For more information, see https://www.hologen-network.eu

Applications are invited for 1-2 full-time Doctoral Researcher positions at the University of Turku, Finland.

The position is offered within the MSCA Doctoral Training Network and is fully funded for three years with an option for fourth year. HoloGen network is funded by the European Union's Horizon Europe MSCA Doctoral Network programme under grant agreement No. 101169005. 

JOB DESCRIPTION 

1-2 fully-funded fixed-term Doctoral Researcher positions in Computational Microbiome research at the research teams of Professor Leo Lahti and Adj. Prof. Aki Havulinna, University of Turku, Finland.

The positions are intended for full-time research towards PhD thesis. We work on a wide range of topics in computational microbiome research. The project aims to advance scientific understanding on the function and interactions of the human microbiome based on large-scale population cohorts. Different project areas are available related to the development and application of computational methods for population cohort studies and multi-omic data integration (e.g. metagenomics, genomics, metabolomics).

We blend approaches from statistics, machine learning, ecology, epidemiology, bioinformatics, and related fields. The key data sources include comprehensively phenotyped cohorts with up to tens of thousands of participants. You will work in close collaboration with key partners in Finland and abroad, with a unique opportunity to make pioneering work in a rapidly growing data-intensive research field. The project includes a secondment period in another team within this European doctoral network.

Host institute

We are a team of young scientists with a solid track record of successful mentoring and international collaboration in computational life sciences. Our collaborators include several top universities in the world, allowing for excellent networking opportunities with leading researchers from a wide spectrum of fields. You will also have access to the state-of-the-art European supercomputing resources provided by the Finnish IT Center for Science (CSC).


Who we are looking for

REQUIREMENTS  

Eligibility criteria: Please check carefully that you are eligible; all conditions below are compulsory. 

Transnational mobility: The researcher must not have resided or carried out their main activity (work, studies, etc.) in the country of the host organization (Finland) for more than 12 months in the 3 years immediately prior to the start date of the agreement.  

Early-Stage Researchers (ESRs)/fresh MSc graduates: All researchers recruited in HoloGen must have less than 4 years since the completion of their first MSc degree and have not been awarded any doctoral degree at the date of employment. 

Background requirements: The applicant must have completed MSc studies in a relevant field, such as data analysis, computer science, (bio)statistics, (bio)informatics, ecology, (micro)biology, or a relevant application field (e.g. in life sciences).

English language requirements: Applicants must have good English skills and a certificate that proves those skills. Please read more about the language requirements: 

https://www.utu.fi/en/research/utugs/how-to-apply/language  

Additionally, we expect: 

  • Experience in statistical data analysis, machine learning and data visualization
  • Fluency in at least one data science language (e.g. R or Julia)
  • Ability to work both independently and in a team
  • Willingness to learn new and multidisciplinary skills
  • Good communication and interpersonal skills

We also appreciate the following:

  • Relevant previous academic and other work experience
  • Familiarity with processing metagenomic, metabolomic, and other omic data
  • Experience with Linux/Unix, computing clusters or cloud- and high-performance computing
  • Experience in open source development
  • Experience in microbiome research

Additional information: The person selected for the position must separately apply for the Doctoral degree study right at the Faculty of Technology, University of Turku. 


Benefits

WE OFFER 

Expected start date: Negotiable between November 1, 2024 and February 28, 2025.

Type of contract: Fixed-term 

Duration: Three years (36 months) with an option for fourth year

Job Status: Full-time 

Trial period: 6 months 

Salary: Approximate gross salary: about 3,700 EUR/month; this amount includes a separate living allowance and mobility allowance according to MSCA rules (in addition a family allowance will be paid for researcher with family). The salary amounts are specified before the employment contract is prepared.

Note: The monthly gross salary may vary somewhat in different years, as side costs change. For different positions within the same HoloGen network, the salary is country- and unit-dependent. 

Researcher Profile: Doctoral researcher / First Stage Researcher (R1) 

Research Field: Computer science

ESR Host Unit: Department of Computing, University of Turku, Finland 

Enrolment in Doctoral degree: University of Turku, Finland 

Target degree: DSc (Technology) in Doctoral Programme in Technology (DPT) 

Degree details: Doctoral Programme in Technology (DPT) | University of Turku (utu.fi) 

The University of Turku offers comprehensive services to its employees, including occupational health care, sports facilities, and opportunities for professional development.

The European Commission has awarded the University of Turku the right to use the HR Excellence in Research logo. The logo is a token of the University's commitment to continuous development of the position and working conditions of researchers according to the guidelines set forth in the European Charter for Researchers.

MSCA-SPECIFIC BENEFITS:  

  • In-depth interactions within a rich network of leading European research institutes  
  • Mentorship with official reporting, support and guidance, coaching in personal and professional development with enrollment into the Institute of Engineering and Technology (IET) Professional Development scheme  
  • Comprehensive training scheme covering both technical and non-technical skills development  
  • Up to 3 Secondments to partner institutes to promote scientific collaboration and network development 

 

HOW TO APPLY  

Please submit your application at the latest on Monday 14 October 2024 (by 4 pm UTC +03:00 Helsinki/EEST) using the electronic application form of the University of Turku at the following address: 1-2 Fully Funded Doctoral Researcher positions in MSCA Doctoral Network HoloGen | Faculty of Technology (talentadore.com)

The link to the application system is at the beginning and in the end of this announcement (“Apply for this position”). 

Please write your application and all the accompanying documentation in English and attach them in PDF format.
 
Required attachments (in case the applicant is invited for the interview – the certified copies of degrees should be provided before it takes place): 

 1. A motivation letter (max 1 page)

2. CV (see template if needed: https://europa.eu/europass/en/create-europass-cv)

3. List of publications (if applicable) Please see the instructions 

4. Copies of degree and academic transcripts in English (with grades and rankings)

5. Certificate of English language proficiency  

6. Contact information for 1-3 referees (name, position, affiliation, e-mail). 
 

We value equality and diversity in our work community and encourage qualified applicants, regardless of background, to apply for our open positions. 

For further information about the position, please contact Prof. Leo Lahti (leo.lahti@utu.fi / +358 50 436 4626). Regarding the recruitment process, please contact HR Specialist Nina Reini (nina.reini@utu.fi).

 

Working and living conditions in Finland

Finland is among the most stable, free, and safest countries in the world, based on prominent ratings by various agencies. It is also ranked as one of the top countries as far as social progress is concerned. Turku region with its 320,000 people, former capital and a major urban area in Finland, is located in southwestern Finland. A leading hub for technological development and economic growth, Turku has a rich cultural history and is the gateway to the most beautiful archipelago. 

Read more about Finland and Turku: 

Unit details: The University of Turku is a world-class multidisciplinary research university which offers interesting challenges and a unique vantage point for national and international research and education. It is an active academic community of more than 25,000 students and staff members from over 100 different countries.  

We welcome you cordially to our working community. In case you are arriving in Finland for the first time, we are offering you good orientation support. Please read further information at the website https://www.utu.fi/en/university/come-work-with-us


Department of Computing

The Department of Computing educates professionals for the modern digitalised society. Central themes of teaching and research include Digitalisation, Machine Learning, Autonomous and Intelligent Systems, Cybersecurity and Health Technology. 

The Faculty of Technology is the newest faculty of the University of Turku, it was established in the beginning of 2021. The Faculty consists of the Department of Computing, Department of Biotechnology and the Department of Mechanical and Materials Engineering. We have more than 2,000 graduate and postgraduate students and circa 400 employees, 50 of whom are professors. Our faculty is an international, multicultural and diverse work community.

The University of Turku is an inspiring and international academic community of 25,000 students and staff in Southwest Finland. We build a sustainable future with multidisciplinary research, education, and collaboration. With us, your work will have a significant impact and relevance in the changing world.

See our open vacancies

HR Excellence in Research Logo

Information for the applicant

The application form cannot be saved as a draft. However, after submitting you can return to edit your application via the link you receive by email. The application can be edited until the application deadline.

You have 6 hours to complete your application before the timeout.

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Jobbeskrivelse

Titel
1-2 Fully Funded Doctoral Researcher positions in MSCA Doctoral Network HoloGen
Arbejdsgiver
Beliggenhed
20014 Turun yliopisto Åbo, Finland
Publiceret
2024-09-16
Ansøgningsfrist
2024-10-14 16:00 (Europe/Helsinki)
2024-10-14 15:00 (CET)
Jobtype
Gem job

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Om arbejdsgiveren

The University of Turku has a unique, creative and inspirational work environment. Here you will work with top experts, pedagogues and researchers.

Besøg arbejdsgiverens side

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